Luís F. de Figueiredo






Selected Publications:

    D. Schober, D. Jacob, M. Wilson, J. A. Cruz, A. Marcu, J. R. Grant, A. Moing, C. Deborde, L. F. de Figueiredo, K. Haug, P. Rocca-Serra, J. Easton, T. M. D. Ebbels, J. Hao, C. Ludwig, U. L. Guenther, A. Rosato , M. S. Klein, I. A. Lewis, C. Luchinat, A. R. Jones, A. Grauslys, M. Larralde, M. Yokochi, N. Kobayashi, A. Porzel, J. L. Griffin , M. R. Viant, D. S. Wishart, C. Steinbeck, R. M. Salek and S. Neumann (2018) nmrML: A Community Supported Open Data Standard for the Description, Storage, and Exchange of NMR Data . Analytical Chemistry, 90: 649–656 (doi:10.1021/acs.analchem.7b02795)


    S. Pande, H. Merker, K. Bohl, M. Reichelt, S. Schuster, L.F. de Figueiredo, C. Kaleta and C. Kost (2013) Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria. The ISME Journal, 8: 953–962 (doi:10.1038/ismej.2013.211)


    S. Beisken, T. Meinl, B. Wiswedel, L.F. de Figueiredo, M. Berthold and C. Steinbeck (2013) KNIME-CDK: Workflow-driven cheminformatics. BMC Bioinformatics, 14:257. (doi:10.1186/1471-2105-14-257)


    A. Rezola, J. Pey, L.F. Figueiredo, A. Podhorski, S. Schuster, A. Rubio, and F.J. Planes (2013) Selection of human tissue-specific elementary flux modes using gene expression data. Bioinformatics, 29:2009-16.(doi:10.1093/bioinformatics/btt328)


    J. Gebauer, S. Schuster, L. F. de Figueiredo, C. Kaleta (2012) Detecting and investigating substrate cycles in a genome‐scale human metabolic network. FEBS Journal, 279:3192–3202 (both authors contributed equally; doi:10.1111/j.1742-4658.2012.08700.x)


    W. Vongsangnak, L. F. de Figueiredo, J. Förster, T. Weber, J. Thykaer, E. Stegmann, W. Wohlleben, J. Nielsen (2012) Genome-scale metabolic representation of Amycolatopsis balhimycina. Biotechnology and Bioengineering, 109:1798–1807 (both authors contributed equally; doi:10.1002/bit.24436)


    L. F. de Figueiredo, T. I. Gossmann, M. Ziegler and S. Schuster (2011) Pathway analysis of NAD+ metabolism. Biochem. J., 439:341–348 (doi:10.1042/BJ20110320)


    C. Kaleta, L. F. de Figueiredo, I. Heiland, S. Klamt, S. Schuster (2011) Special issue: Integration of OMICs datasets into Metabolic Pathway Analysis. BioSystems, 105:107-108 (doi:10.1016/j.biosystems.2011.05.008)


    C. Kaleta, L. F. de Figueiredo, S. Werner, R. Guthke, M. Ristow, S. Schuster (2011) In Silico Evidence for Gluconeogenesis from Fatty Acids in Humans. PLoS Computational Biology, 7:e1002116 (doi:10.1371/journal.pcbi.1002116)


    A. Rezola, L. F. de Figueiredo, M. Brock, J. Pey, A. Podhorski, C. Wittmann, S. Schuster, A. Bockmayr and F. J. Planes (2011) Exploring metabolic pathways in genome-scale networks via generating flux modes. Bioinformatics, 27:534-540 (both authors contributed equally; doi:10.1093/bioinformatics/btq681)


    E. Ruppin, J. A. Papin, L. F. de Figueiredo and S. Schuster (2010) Metabolic reconstruction, constraint-based analysis and game theory to probe genome-scale metabolic networks. Curr Opin Biotechnol, 21:502-510 (doi:10.1016/j.copbio.2010.07.002)


    L. F. de Figueiredo, A. Podhorski, A. Rubio, C. Kaleta, J. E. Beasley, S. Schuster and F. J. Planes. (2009) Computing the shortest elementary flux modes in genome-scale metabolic networks. Bioinformatics, 25:3158-3165 (doi: 10.1093/bioinformatics/btp564)


    L. F. de Figueiredo, S. Schuster, C. Kaleta, D. A. Fell (2009) Can sugars be produced from fatty acids? A test case for pathway analysis tools. Bioinformatics, 25(1):152-158 (doi:10.1093/bioinformatics/btn621)


Last update: 19/01/2020  |   © 2010-2020 Luis F. de Figueiredo